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1.13.11.87: endo-cleaving rubber dioxygenase

This is an abbreviated version!
For detailed information about endo-cleaving rubber dioxygenase, go to the full flat file.

Word Map on EC 1.13.11.87

Reaction

Cleavage of cis-1,4-polyisoprene polymers into a mixture of compounds, including a C20 compound ((4Z,8Z,12Z,16Z,20Z,24Z)-4,8,12,16,20,24-hexamethyl-28-oxononacosa-4,8,12,16,20,24-hexaenal), a C25 compound ((4Z,8Z,12Z,16Z,20Z)-4,8,12,16,20-pentamethyl-24-oxopentacosa-4,8,12,16,20-pentaenal), a C30 compound ((4Z,8Z,12Z,16Z)-4,8,12,16-tetramethyl-20-oxohenicosa-4,8,12,16-tetraenal), and larger isoprenologes such as C35, C40, C45, and higher analogues =

Synonyms

GPOL_174p00150, GPOL_c48310, latex clearing protein, latex-clearing protein, Lcp, Lcp protein, Lcp1, lcp1VH2, Lcp2, lcp2VH2, LcpK30, polyisoprene-cleaving rubber oxygenase, roxA, RoxB, rubber oxidizing protein, rubber oxygenase, rubber oxygenase B

ECTree

     1 Oxidoreductases
         1.13 Acting on single donors with incorporation of molecular oxygen (oxygenases)
             1.13.11 With incorporation of two atoms of oxygen
                1.13.11.87 endo-cleaving rubber dioxygenase

Reference

Reference on EC 1.13.11.87 - endo-cleaving rubber dioxygenase

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REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Braaz, R.; Armbruster, W.; Jendrossek, D.
Heme-dependent rubber oxygenase RoxA of Xanthomonas sp. cleaves the carbon backbone of poly(cis-1,4-Isoprene) by a dioxygenase mechanism
Appl. Environ. Microbiol.
71
2473-2478
2005
Xanthomonas sp. 35Y (Q7X0P3)
Manually annotated by BRENDA team
Birke, J.; Jendrossek, D.
Rubber oxygenase and latex clearing protein cleave rubber to different products and use different cleavage mechanisms
Appl. Environ. Microbiol.
80
5012-5020
2014
Streptomyces sp. K30 (Q3L8N0)
Manually annotated by BRENDA team
Birke, J.; Röther, W.; Jendrossek, D.
Latex clearing protein (Lcp) of Streptomyces sp. strain K30 is a b-type cytochrome and differs from rubber oxygenase A (RoxA) in its biophysical properties
Appl. Environ. Microbiol.
81
3793-3799
2015
Streptomyces sp. K30 (Q3L8N0)
Manually annotated by BRENDA team
Birke, J.; Röther, W.; Jendrossek, D.
RoxB is a novel type of rubber oxygenase that combines properties of rubber oxygenase RoxA and latex clearing protein (Lcp)
Appl. Environ. Microbiol.
83
e00721
2017
Xanthomonas sp. (A0A1S6Q8F9)
Manually annotated by BRENDA team
Ibrahim, E.M.; Arenskoetter, M.; Luftmann, H.; Steinbuechel, A.
Identification of poly(cis-1,4-Isoprene) degradation intermediates during growth of moderately thermophilic actinomycetes on rubber and cloning of a functional lcp homologue from Nocardia farcinica strain E1
Appl. Environ. Microbiol.
72
3375-3382
2006
Nocardia farcinica (Q1HUS3), Nocardia farcinica E1 (Q1HUS3)
Manually annotated by BRENDA team
Yikmis, M.; Arenskoetter, M.; Rose, K.; Lange, N.; Wernsmann, H.; Wiefel, L.; Steinbuechel, A.
Secretion and transcriptional regulation of the latex-clearing protein, Lcp, by the rubber-degrading bacterium Streptomyces sp. strain K30
Appl. Environ. Microbiol.
74
5373-5382
2008
Streptomyces sp. K30 (Q3L8N0)
Manually annotated by BRENDA team
Hiessl, S.; Schuldes, J.; Thuermer, A.; Halbsguth, T.; Broeker, D.; Angelov, A.; Liebl, W.; Daniel, R.; Steinbuechel, A.
Involvement of two latex-clearing proteins during rubber degradation and insights into the subsequent degradation pathway revealed by the genome sequence of Gordonia polyisoprenivorans strain VH2
Appl. Environ. Microbiol.
78
2874-2887
2012
Gordonia polyisoprenivorans (H6N4Z1), Gordonia polyisoprenivorans VH2 (H6N4Z1), Gordonia polyisoprenivorans VH2
Manually annotated by BRENDA team
Roether, W.; Austen, S.; Birke, J.; Jendrossek, D.
Cleavage of rubber by the latex clearing protein (Lcp) of Streptomyces sp. strain K30 molecular insights
Appl. Environ. Microbiol.
82
6593-6602
2016
Streptomyces sp. K30 (Q3L8N0)
Manually annotated by BRENDA team
Birke, J.; Roether, W.; Jendrossek, D.
RoxB Is a Novel Type of Rubber Oxygenase That Combines Properties of Rubber Oxygenase RoxA and Latex Clearing Protein (Lcp)
Appl. Environ. Microbiol.
83
e00721-17
2017
Xanthomonas sp. 35Y (A0A1S6Q8F9)
Manually annotated by BRENDA team
Birke, J.; Roether, W.; Jendrossek, D.
Rhizobacter gummiphilus NS21 has two rubber oxygenases (RoxA and RoxB) acting synergistically in rubber utilisation
Appl. Microbiol. Biotechnol.
102
10245-10257
2018
Rhizobacter gummiphilus, Rhizobacter gummiphilus NS21
Manually annotated by BRENDA team
Jendrossek, D.; Birke, J.
Rubber oxygenases
Appl. Microbiol. Biotechnol.
103
125-142
2019
Rhodococcus rhodochrous, Nocardia farcinica, Streptomyces sp. K30, Rhizobacter gummiphilus, Gordonia polyisoprenivorans, Nocardia farcinica NVL3, Rhizobacter gummiphilus NS21, Rhodococcus rhodochrous RPK1, Gordonia polyisoprenivorans VH2
Manually annotated by BRENDA team
Watcharakul, S.; Roether, W.; Birke, J.; Umsakul, K.; Hodgson, B.; Jendrossek, D.
Biochemical and spectroscopic characterization of purified Latex Clearing Protein (Lcp) from newly isolated rubber degrading Rhodococcus rhodochrous strain RPK1 reveals novel properties of Lcp
BMC Microbiol.
16
92
2016
Rhodococcus rhodochrous (A0A165QBG6), Rhodococcus rhodochrous, Rhodococcus rhodochrous RPK1 (A0A165QBG6)
Manually annotated by BRENDA team
Jendrossek, D.; Reinhardt, S.
Sequence analysis of a gene product synthesized by Xanthomonas sp. during growth on natural rubber latex
FEMS Microbiol. Lett.
224
61-65
2003
Xanthomonas sp.
Manually annotated by BRENDA team
Linh, D.V.; Huong, N.L.; Tabata, M.; Imai, S.; Iijima, S.; Kasai, D.; Anh, T.K.; Fukuda, M.
Characterization and functional expression of a rubber degradation gene of a Nocardia degrader from a rubber-processing factory
J. Biosci. Bioeng.
123
412-418
2017
Nocardia farcinica (Q1HUS3), Nocardia farcinica, Nocardia farcinica DSM 43665T (Q1HUS3)
Manually annotated by BRENDA team
Roether, W.; Birke, J.; Grond, S.; Beltran, J.M.; Jendrossek, D.
Production of functionalized oligo-isoprenoids by enzymatic cleavage of rubber
Microb. Biotechnol.
10
1426-1433
2017
Streptomyces sp. K30, Streptomyces sp. K30 (Q3L8N0), Xanthomonas sp. 35Y, Xanthomonas sp. 35Y (A0A1S6Q8F9)
Manually annotated by BRENDA team
Yikmis, M.; Steinbuechel, A.
Importance of the latex-clearing protein (Lcp) for poly(cis-1,4-isoprene) rubber cleavage in Streptomyces sp. K30
MicrobiologyOpen
1
13-24
2012
Streptomyces sp. K30 (Q3L8N0)
Manually annotated by BRENDA team
Ilcu, L.; Roether, W.; Birke, J.; Brausemann, A.; Einsle, O.; Jendrossek, D.
Structural and functional analysis of Latex clearing protein (Lcp) provides insight into the enzymatic cleavage of rubber
Sci. Rep.
7
6179
2017
Streptomyces sp. K30 (Q3L8N0)
Manually annotated by BRENDA team
Birke, J.; Jendrossek, D.
Solimonas fluminis has an active latex-clearing protein
Appl. Microbiol. Biotechnol.
103
8229-8239
2019
Solimonas fluminis, Solimonas fluminis HR-BB
Manually annotated by BRENDA team
Altenhoff, A.L.; Thierbach, S.; Steinbuechel, A.
In vitro studies on the degradation of common rubber waste material with the latex clearing protein (Lcp1VH2) of Gordonia polyisoprenivorans VH2
Biodegradation
32
113-125
2021
Gordonia polyisoprenivorans, Gordonia polyisoprenivorans VH2
Manually annotated by BRENDA team
Kasai, D.
Poly(cis-1,4-isoprene)-cleavage enzymes from natural rubber-utilizing bacteria
Biosci. Biotechnol. Biochem.
84
1089-1097
2020
Solimonas fluminis, Rhodococcus rhodochrous (A0A165QBG6), Gordonia polyisoprenivorans (B2KPH0), Gordonia westfalica (B2KPH1), Nocardia farcinica (Q1HUS3), Streptomyces sp. K30 (Q3L8N0), Nocardia farcinica E1 (Q1HUS3), Solimonas fluminis HR-BB, Rhodococcus rhodochrous RPK1 (A0A165QBG6), Gordonia westfalica Kb1 (B2KPH1), Gordonia polyisoprenivorans VH2 (B2KPH0)
Manually annotated by BRENDA team
Braga, S.P.; Dos Santos, A.P.; Paganini, T.; Barbosa, D.; Epamino, G.W.C.; Morais, C.; Martins, L.F.; Silva, A.M.; Setubal, J.C.; Vallim, M.A.; Pascon, R.C.
First report of cis-1,4-polyisoprene degradation by Gordonia paraffinivorans
Braz. J. Microbiol.
50
1051-1062
2019
Gordonia paraffinivorans, Gordonia paraffinivorans MTZ041
Manually annotated by BRENDA team
Vivod, R.; Andler, R.; Oetermann, S.; Altenhoff, A.L.; Seipel, N.; Holtkamp, M.; Hogeback, J.; Karst, U.; Steinbuechel, A.
Characterization of the latex clearing protein of the poly(cis-1,4-isoprene) and poly(trans-1,4-isoprene) degrading bacterium Nocardia nova SH22a
J. Gen. Appl. Microbiol.
65
293-300
2020
Nocardia nova, Nocardia nova SH22a
Manually annotated by BRENDA team
Oetermann, S.; Jongsma, R.; Coenen, A.; Keller, J.; Steinbuechel, A.
LcpRVH2 - regulating the expression of latex-clearing proteins in Gordonia polyisoprenivorans VH2
Microbiology
165
343-354
2019
Gordonia polyisoprenivorans, Gordonia polyisoprenivorans VH2
Manually annotated by BRENDA team
Andler, R.; Valdes, C.; Diaz-Barrera, A.; Steinbuechel, A.
Biotransformation of poly(cis-1,4-isoprene) in a multiphase enzymatic reactor for continuous extraction of oligo-isoprenoid molecules
New Biotechnol.
58
10-16
2020
Gordonia polyisoprenivorans (H6N162), Gordonia polyisoprenivorans VH2 (H6N162)
Manually annotated by BRENDA team
Zhang, H.; Kong, D.; Wang, L.; Xia, W.; Yao, C.; Wu, J.
Degradation of UV-pretreated polyolefins by latex clearing protein from Streptomyces sp. strain K30
Sci. Total Environ.
806
150779
2022
Streptomyces sp. K30
Manually annotated by BRENDA team