Application | Comment | Organism |
---|---|---|
medicine | target for anti-Helicobacter pylori drugs | Helicobacter pylori |
Cloned (Comment) | Organism |
---|---|
for over-expression in Escherichia coli BL21(DE3) cells | Helicobacter pylori |
Crystallization (Comment) | Organism |
---|---|
apo-HpPDF, HpPDF - N-trans-caffeoyltyramine complex, HpPDF - (E)-N-phenethyl-3-(3,4-diacetoxyphenyl)acrylamide complex | Helicobacter pylori |
Inhibitors | Comment | Organism | Structure |
---|---|---|---|
(E)-N-phenethyl-3-(3,4-diacetoxyphenyl)acrylamide | IC50: 0.00125 mM | Helicobacter pylori | |
N-trans-caffeoyltyramine | IC50: 0.0108 mM | Helicobacter pylori |
Metals/Ions | Comment | Organism | Structure |
---|---|---|---|
Co2+ | - |
Helicobacter pylori | |
Fe2+ | - |
Helicobacter pylori | |
Ni2+ | - |
Helicobacter pylori | |
Zn2+ | - |
Helicobacter pylori |
Natural Substrates | Organism | Comment (Nat. Sub.) | Natural Products | Comment (Nat. Pro.) | Rev. | Reac. |
---|---|---|---|---|---|---|
formyl-L-methionyl peptide + H2O | Helicobacter pylori | - |
formate + L-methionyl peptide | - |
? |
Organism | UniProt | Comment | Textmining |
---|---|---|---|
Helicobacter pylori | Q672W7 | - |
- |
Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
---|---|---|---|---|---|---|
formyl-L-methionyl peptide + H2O | - |
Helicobacter pylori | formate + L-methionyl peptide | - |
? | |
N-formyl-L-Met-L-Ala-L-Ser + H2O | activity assay | Helicobacter pylori | formate + L-Met-L-Ala-L-Ser | - |
? |
Synonyms | Comment | Organism |
---|---|---|
HpPDF | - |
Helicobacter pylori |
- |
Helicobacter pylori | |
peptide deformylase | - |
Helicobacter pylori |
Temperature Optimum [°C] | Temperature Optimum Maximum [°C] | Comment | Organism |
---|---|---|---|
37 | - |
activity assay | Helicobacter pylori |
pH Optimum Minimum | pH Optimum Maximum | Comment | Organism |
---|---|---|---|
7.5 | - |
activity assay | Helicobacter pylori |
IC50 Value | IC50 Value Maximum | Comment | Organism | Inhibitor | Structure |
---|---|---|---|---|---|
0.00125 | - |
IC50: 0.00125 mM | Helicobacter pylori | (E)-N-phenethyl-3-(3,4-diacetoxyphenyl)acrylamide | |
0.0108 | - |
IC50: 0.0108 mM | Helicobacter pylori | N-trans-caffeoyltyramine |