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Literature summary for 3.1.26.11 extracted from
- Unstructured RNA is a substrate for tRNase Z (2006), Biochemistry, 45, 5486-5492.
Cloned(Commentary)
| Cloned (Comment) | Organism |
|---|---|
| expression in Escherichia coli | Bacillus subtilis |
| expression in Escherichia coli | Escherichia coli |
| expression in Escherichia coli | Homo sapiens |
| expression in Escherichia coli | Saccharomyces cerevisiae |
| expression in Escherichia coli | Thermotoga maritima |
| expression in Escherichia coli | Pyrobaculum aerophilum |
Metals/Ions
| Metals/Ions | Comment | Organism | Structure |
|---|---|---|---|
| MgCl2 | most active at 0-0.2 mM, weak activity above 3 mM | Bacillus subtilis |  |
| MnCl2 | most active at 0.05 mM | Thermotoga maritima | |
| MnCl2 | most active at 1-5 mM | Bacillus subtilis | |
Organism
| Organism | UniProt | Comment | Textmining |
|---|---|---|---|
| Bacillus subtilis | - |
- |
- |
| Escherichia coli | - |
- |
- |
| Homo sapiens | - |
- |
- |
| Pyrobaculum aerophilum | - |
- |
- |
| Saccharomyces cerevisiae | - |
- |
- |
| Sus scrofa | - |
- |
- |
| Thermotoga maritima | - |
- |
- |
Purification (Commentary)
| Purification (Comment) | Organism |
|---|---|
- |
Bacillus subtilis |
- |
Escherichia coli |
- |
Homo sapiens |
- |
Saccharomyces cerevisiae |
- |
Thermotoga maritima |
- |
Pyrobaculum aerophilum |
Source Tissue
| Source Tissue | Comment | Organism | Textmining |
|---|---|---|---|
| cell culture | - |
Bacillus subtilis | - |
| cell culture | - |
Escherichia coli | - |
| cell culture | - |
Homo sapiens | - |
| cell culture | - |
Saccharomyces cerevisiae | - |
| cell culture | - |
Thermotoga maritima | - |
| cell culture | - |
Pyrobaculum aerophilum | - |
| liver | - |
Sus scrofa | - |
Substrates and Products (Substrate)
| Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| usRNA1 + H2O | 24 nt unstructured RNA | Bacillus subtilis | ? | - |
? | |
| usRNA1 + H2O | 24 nt unstructured RNA | Escherichia coli | ? | - |
? | |
| usRNA1 + H2O | 24 nt unstructured RNA | Homo sapiens | ? | - |
? | |
| usRNA1 + H2O | 24 nt unstructured RNA | Sus scrofa | ? | - |
? | |
| usRNA1 + H2O | 24 nt unstructured RNA | Saccharomyces cerevisiae | ? | - |
? | |
| usRNA1 + H2O | 24 nt unstructured RNA | Thermotoga maritima | ? | - |
? | |
| usRNA1 + H2O | 24 nt unstructured RNA, no cleavage observed | Pyrobaculum aerophilum | ? | - |
? | |
| usRNA10 + H2O | 40 nt unstructured RNA | Bacillus subtilis | ? | - |
? | |
| usRNA10 + H2O | 40 nt unstructured RNA | Escherichia coli | ? | - |
? | |
| usRNA10 + H2O | 40 nt unstructured RNA | Thermotoga maritima | ? | - |
? | |
| usRNA2 + H2O | 24 nt unstructured RNA | Bacillus subtilis | ? | - |
? | |
| usRNA2 + H2O | 24 nt unstructured RNA | Escherichia coli | ? | - |
? | |
| usRNA2 + H2O | 24 nt unstructured RNA | Thermotoga maritima | ? | - |
? | |
| usRNA3 + H2O | 28 nt unstructured RNA | Bacillus subtilis | ? | - |
? | |
| usRNA3 + H2O | 28 nt unstructured RNA | Escherichia coli | ? | - |
? | |
| usRNA3 + H2O | 28 nt unstructured RNA | Thermotoga maritima | ? | - |
? | |
| usRNA4 + H2O | 39 nt unstructured RNA | Bacillus subtilis | ? | - |
? | |
| usRNA4 + H2O | 39 nt unstructured RNA | Escherichia coli | ? | - |
? | |
| usRNA4 + H2O | 39 nt unstructured RNA | Thermotoga maritima | ? | - |
? | |
| usRNA5 + H2O | 26 nt unstructured RNA | Bacillus subtilis | ? | - |
? | |
| usRNA5 + H2O | 26 nt unstructured RNA | Escherichia coli | ? | - |
? | |
| usRNA5 + H2O | 26 nt unstructured RNA | Thermotoga maritima | ? | - |
? | |
| usRNA6 + H2O | 26 nt unstructured RNA | Bacillus subtilis | ? | - |
? | |
| usRNA6 + H2O | 26 nt unstructured RNA | Escherichia coli | ? | - |
? | |
| usRNA6 + H2O | 26 nt unstructured RNA | Thermotoga maritima | ? | - |
? | |
| usRNA7 + H2O | 24 nt unstructured RNA | Bacillus subtilis | ? | - |
? | |
| usRNA7 + H2O | 24 nt unstructured RNA | Escherichia coli | ? | - |
? | |
| usRNA7 + H2O | 24 nt unstructured RNA | Thermotoga maritima | ? | - |
? | |
| usRNA8 + H2O | 43 nt unstructured RNA | Bacillus subtilis | ? | - |
? | |
| usRNA8 + H2O | 43 nt unstructured RNA | Escherichia coli | ? | - |
? | |
| usRNA8 + H2O | 43 nt unstructured RNA | Thermotoga maritima | ? | - |
? | |
| usRNA9 + H2O | 22 nt unstructured RNA | Bacillus subtilis | ? | - |
? | |
| usRNA9 + H2O | 22 nt unstructured RNA | Escherichia coli | ? | - |
? | |
| usRNA9 + H2O | 22 nt unstructured RNA | Thermotoga maritima | ? | - |
? | |
Synonyms
| Synonyms | Comment | Organism |
|---|---|---|
| 3' tRNase | - |
Bacillus subtilis |
| 3' tRNase | - |
Escherichia coli |
| 3' tRNase | - |
Homo sapiens |
| 3' tRNase | - |
Sus scrofa |
| 3' tRNase | - |
Saccharomyces cerevisiae |
| 3' tRNase | - |
Thermotoga maritima |
| 3' tRNase | - |
Pyrobaculum aerophilum |
| tRNase Z | - |
Bacillus subtilis |
| tRNase Z | - |
Escherichia coli |
| tRNase Z | - |
Homo sapiens |
| tRNase Z | - |
Sus scrofa |
| tRNase Z | - |
Saccharomyces cerevisiae |
| tRNase Z | - |
Thermotoga maritima |
| tRNase Z | - |
Pyrobaculum aerophilum |
| tRnaseZL | - |
Homo sapiens |
| tRnaseZL | - |
Sus scrofa |
| tRnaseZL | - |
Saccharomyces cerevisiae |
| tRnaseZS | - |
Homo sapiens |
| tRnaseZS | - |
Pyrobaculum aerophilum |
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Release 2023.1 (January 2023)
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