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Literature summary for 2.1.1.269 extracted from

  • Howard, E.C.; Sun, S.; Reisch, C.R.; del Valle, D.A.; Buergmann, H.; Kiene, R.P.; Moran, M.A.
    Changes in dimethylsulfoniopropionate demethylase gene assemblages in response to an induced phytoplankton bloom (2011), Appl. Environ. Microbiol., 77, 524-531.
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

Cloned (Comment) Organism
gene dmdA, genetic cluster identification from 578 dmdA sequences from seawater plankton probes, DNA and amino acid sequence determination and analysis, phylogenetic analysis Roseobacter sp.
gene dmdA, genetic cluster identification from 578 dmdA sequences from seawater plankton probes, DNA and amino acid sequence determination and analysis, phylogenetic analysis Candidatus Pelagibacter ubique
gene dmdA, genetic cluster identification from 578 dmdA sequences from seawater plankton probes, DNA and amino acid sequence determination and analysis, phylogenetic analysis Candidatus Puniceispirillum marinum
gene dmdA, genetic cluster identification from 578 dmdA sequences from seawater plankton probes, DNA and amino acid sequence determination and analysis, phylogenetic analysis unidentified marine bacterioplankton

Organism

Organism UniProt Comment Textmining
Candidatus Pelagibacter ubique
-
pelagibacteraceae, in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, SAR11 group, clade C, genetic cluster identification from 578 dmdA sequences
-
Candidatus Pelagibacter ubique
-
pelagibacteraceae, strains HTCC1002 and HTCC1062, in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, SAR11 group, clade D, genetic cluster identification from 578 dmdA sequences
-
Candidatus Pelagibacter ubique HTCC7211
-
pelagibacteraceae, in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, SAR11 group, clade C, genetic cluster identification from 578 dmdA sequences
-
Candidatus Puniceispirillum marinum
-
pelagibacteraceae, in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, SAR11 group, clade B, genetic cluster identification from 578 dmdA sequences
-
Flavobacteriaceae
-
in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, genetic cluster identification from 578 dmdA sequences
-
Rhodobacterales
-
in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, OM60 group, genetic cluster OM60-like identification from 578 dmdA sequences
-
Rhodospirillales
-
in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, clade A, genetic cluster identification from 578 dmdA sequences
-
Roseobacter sp.
-
in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, clade A, genetic cluster identification from 578 dmdA sequences
-
Sphingomonadales
-
in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, OM60 group, genetic cluster OM60-like identification from 578 dmdA sequences
-
unidentified marine bacterioplankton
-
pelagibacteraceae, strains HTCC1002 and HTCC1062, in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, OM60 group, clade E, genetic cluster identification from 578 dmdA sequences
-
unidentified marine bacterioplankton HTCC2080
-
pelagibacteraceae, strains HTCC1002 and HTCC1062, in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, OM60 group, clade E, genetic cluster identification from 578 dmdA sequences
-

Synonyms

Synonyms Comment Organism
DmdA
-
Roseobacter sp.
DmdA
-
Candidatus Pelagibacter ubique
DmdA
-
Rhodobacterales
DmdA
-
Flavobacteriaceae
DmdA
-
Candidatus Puniceispirillum marinum
DmdA
-
Sphingomonadales
DmdA
-
Rhodospirillales
DmdA
-
unidentified marine bacterioplankton
DMSP demethylase
-
Roseobacter sp.
DMSP demethylase
-
Candidatus Pelagibacter ubique
DMSP demethylase
-
Rhodobacterales
DMSP demethylase
-
Flavobacteriaceae
DMSP demethylase
-
Candidatus Puniceispirillum marinum
DMSP demethylase
-
Sphingomonadales
DMSP demethylase
-
Rhodospirillales
DMSP demethylase
-
unidentified marine bacterioplankton

General Information

General Information Comment Organism
metabolism the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways Roseobacter sp.
metabolism the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways Candidatus Pelagibacter ubique
metabolism the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways Rhodobacterales
metabolism the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways Flavobacteriaceae
metabolism the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways Candidatus Puniceispirillum marinum
metabolism the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways Sphingomonadales
metabolism the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways Rhodospirillales
metabolism the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways unidentified marine bacterioplankton