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Literature summary for 1.1.1.195 extracted from

  • Nur Fariza, M.; Pang, S.; Choong, C.; Wickneswari, R.
    Extensive DNA sequence variations in two lignin genes, Cinnamate 4-hydroxylase and Cinnamyl Alcohol Dehydrogenase from Acacia mangium and Acacia auriculiformis (2008), J. Biol. Sci., 8, 687-690.
No PubMed abstract available

Application

Application Comment Organism
agriculture putative single nucleotide polymorphisms can be developed as single nucleotide polymorphisms markers for quantitative trait loci detection in Acacia hybrid mapping populations after validation using segregation analysis. Selecting favourable alleles from progenies which produce desirable lignin profiles will be advantageous in tree breeding programmes for plantation establishment Acacia mangium
agriculture putative single nucleotide polymorphisms can be developed as single nucleotide polymorphisms markers for quantitative trait loci detection in Acacia hybrid mapping populations after validation using segregation analysis. Selecting favourable alleles from progenies which produce desirable lignin profiles will be advantageous in tree breeding programmes for plantation establishment Acacia auriculiformis

Cloned(Commentary)

Cloned (Comment) Organism
1.3 kb cDNA fragment cloned into pGEM-T Easy vector and transformed into competent cell of DH5alpha from Escherichia coli Acacia mangium
1.3 kb cDNA fragment cloned into pGEM-T Easy vector and transformed into competent cell of DH5alpha from Escherichia coli Acacia auriculiformis

Organism

Organism UniProt Comment Textmining
Acacia auriculiformis
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A3 and A6
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Acacia mangium
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M20 and M22
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Purification (Commentary)

Purification (Comment) Organism
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Acacia mangium
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Acacia auriculiformis

Source Tissue

Source Tissue Comment Organism Textmining
bark of 32 single nucleotide polymorphisms in the coding region of CAD, 28 single nucleotide polymorphisms are detected in Acacia auriculiformis A3 x Acacia mangium M22 parental combination and 22 single nucleotide polymorphisms are detected in Acacia auriculiformis A6 x Acacia mangium M20 parental combination Acacia mangium
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bark of 32 single nucleotide polymorphisms in the coding region of CAD, 28 single nucleotide polymorphisms are detected in Acacia auriculiformis A3 x Acacia mangium M22 parental combination and 22 single nucleotide polymorphisms are detected in Acacia auriculiformis A6 x Acacia mangium M20 parental combination Acacia auriculiformis
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Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
additional information 32 single nucleotide polymorphisms in the coding region of CAD, whereby 12 are nonsynonymous mutations and 20 are synonymous mutations. 11 and three synonymous mutations are detected in Acacia auriculiformis A3 x Acacia mangium M22 and Acacia auriculiformis A6 x Acacia mangium M20 parental combination, respectively. The synonymous mutations detected are 20 in both genes. The high occurences of single nucleotide polymorphisms are possible because the plant has to adopt physiologically to a variety of unpredictable environmental conditions Acacia mangium ?
-
?
additional information 32 single nucleotide polymorphisms in the coding region of CAD, whereby 12 are nonsynonymous mutations and 20 are synonymous mutations. 11 and three synonymous mutations are detected in Acacia auriculiformis A3 x Acacia mangium M22 and Acacia auriculiformis A6 x Acacia mangium M20 parental combination, respectively. The synonymous mutations detected are 20 in both genes. The high occurences of single nucleotide polymorphisms are possible because the plant has to adopt physiologically to a variety of unpredictable environmental conditions Acacia auriculiformis ?
-
?

Synonyms

Synonyms Comment Organism
CAD
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Acacia mangium
CAD
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Acacia auriculiformis
cinnamyl alcohol dehydrogenase
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Acacia mangium
cinnamyl alcohol dehydrogenase
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Acacia auriculiformis