Information on EC 2.6.1.83 - LL-diaminopimelate aminotransferase

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The expected taxonomic range for this enzyme is: Bacteria, Eukaryota, Archaea

EC NUMBER
COMMENTARY hide
2.6.1.83
-
RECOMMENDED NAME
GeneOntology No.
LL-diaminopimelate aminotransferase
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
LL-2,6-diaminoheptanedioate + 2-oxoglutarate = (S)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate + L-glutamate + H2O
show the reaction diagram
-
-
-
-
PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
Biosynthesis of antibiotics
-
-
Biosynthesis of secondary metabolites
-
-
L-lysine biosynthesis VI
-
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Lysine biosynthesis
-
-
Metabolic pathways
-
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lysine metabolism
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SYSTEMATIC NAME
IUBMB Comments
LL-2,6-diaminoheptanedioate:2-oxoglutarate aminotransferase
A pyridoxal-phosphate enzyme. In vivo, the reaction occurs in the opposite direction to that shown above. This is one of the final steps in the lysine-biosynthesis pathway of plants (ranging from mosses to flowering plants). meso-Diaminoheptanedioate, an isomer of LL-2,6-diaminoheptanedioate, and the structurally related compounds lysine and ornithine are not substrates. 2-Oxoglutarate cannot be replaced by oxaloacetate or pyruvate. It is not yet known if the substrate of the biosynthetic reaction is the cyclic or acyclic form of tetrahydropyridine-2,6-dicarboxylate.
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
-
SwissProt
Manually annotated by BRENDA team
Arabidopsis thaiana
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UniProt
Manually annotated by BRENDA team
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SwissProt
Manually annotated by BRENDA team
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SwissProt
Manually annotated by BRENDA team
-
SwissProt
Manually annotated by BRENDA team
-
SwissProt
Manually annotated by BRENDA team
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
physiological function
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lysine biosynthesis pathway
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
(S)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate + L-glutamate + H2O
LL-2,6-diaminoheptanedioate + 2-oxoglutarate
show the reaction diagram
-
-
-
-
?
L-2-amino-6-oxopimelate + L-glutamate + H2O
LL-2,6-diaminopimelate + 2-oxoglutarate
show the reaction diagram
L-glutamate + tetrahydrodipicolinate + H2O
LL-diaminopimelate + 2-oxoglutarate
show the reaction diagram
LL-2,6-diaminoheptanedioate + 2-oxoglutarate
(S)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate + L-glutamate + H2O
show the reaction diagram
LL-2,6-diaminopimelate + 2-oxoglutarate
2,3,4,5-tetrahydrodipicolinate + L-glutamate + H2O
show the reaction diagram
LL-2,6-diaminopimelate + 2-oxoglutarate
L-2-amino-6-oxopimelate + L-glutamate + H2O
show the reaction diagram
LL-diaminopimelate + 2-oxoglutarate
L-glutamate + tetrahydrodipicolinate + H2O
show the reaction diagram
meso-diaminopimelate + 2-oxoglutarate
L-glutamate + tetrahydrodipicolinate + H2O
show the reaction diagram
additional information
?
-
NATURAL SUBSTRATES
NATURAL PRODUCTS
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
L-glutamate + tetrahydrodipicolinate + H2O
LL-diaminopimelate + 2-oxoglutarate
show the reaction diagram
-
-
-
-
r
LL-diaminopimelate + 2-oxoglutarate
L-glutamate + tetrahydrodipicolinate + H2O
show the reaction diagram
-
-
-
-
r
additional information
?
-
-
enzyme in the biosynthesis of L-lysine
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-
-
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
pyridoxal 5'-phosphate
INHIBITORS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
(2-[(E)-[1-(4-chlorophenyl)-2,4,6-trioxotetrahydropyrimidin-5(2H)-ylidene]methyl]-1H-indol-1-yl)acetic acid
-
14% inhibition at 0.01 mM
(2-[(E)-[1-(4-methylphenyl)-2,4,6-trioxotetrahydropyrimidin-5(2H)-ylidene]methyl]-1H-indol-1-yl)acetic acid
(2-[(E)-[1-methyl-3-(4-methylphenyl)-2,4,6-trioxotetrahydropyrimidin-5(2H)-ylidene]methyl]-1H-indol-1-yl)acetic acid
-
17% inhibition at 0.01 mM
(2E)-2-cyano-3-[5-(dimethylamino)furan-2-yl]-N-(3,4-dimethylphenyl)prop-2-enamide
-
14% inhibition at 0.01 mM
(2Z)-N'-nitro-2-[[5-(3-nitrophenyl)furan-2-yl]methylidene]hydrazinecarboximidamide
-
13% inhibition at 0.01 mM
(3E)-1-[(4-methoxyphenyl)sulfonyl]-3-[4-oxo-3-(prop-2-en-1-yl)-2-thioxo-1,3-thiazolidin-5-ylidene]-1,3-dihydro-2H-indol-2-one
-
18% inhibition at 0.01 mM
(3E)-1-[(4-methylphenyl)sulfonyl]-3-(4-oxo-2-thioxo-1,3-thiazolidin-5-ylidene)-1,3-dihydro-2H-indol-2-one
-
25% inhibition at 0.01 mM
(3E)-3-[2-(2,4-dimethyl-1,3-thiazol-5-yl)-2-oxoethylidene]-3,4-dihydroquinoxalin-2(1H)-one
-
18% inhibition at 0.01 mM
(3E)-3-[2-oxo-2-(thiophen-2-yl)ethylidene]-3,4-dihydroquinoxalin-2(1H)-one
-
15% inhibition at 0.01 mM
(3Z)-3-(2,4-dimethoxybenzylidene)-5-phenylfuran-2(3H)-one
-
14% inhibition at 0.01 mM
(5E)-5-(1H-indol-2-ylmethylidene)-1-(4-methylphenyl)-2-thioxodihydropyrimidine-4,6(1H,5H)-dione
-
16% inhibition at 0.01 mM
(5E)-5-[(1-benzyl-1H-indol-2-yl)methylidene]-1-(2-methoxyphenyl)-2-thioxodihydropyrimidine-4,6(1H,5H)-dione
-
20% inhibition at 0.01 mM
(5E)-5-[(1-methyl-1H-indol-2-yl)methylidene]-1-(prop-2-en-1-yl)-2-thioxodihydropyrimidine-4,6(1H,5H)-dione
-
35% inhibition at 0.01 mM
(5E)-5-[(1-methyl-1H-indol-2-yl)methylidene]-1-prop-2-en-1-yl-2-thioxodihydropyrimidine-4,6(1H,5H)-dione
-
45% inhibition at 0.01 mM
(5E)-5-[[1-(4-nitrobenzyl)-1H-indol-2-yl]methylidene]-1-(prop-2-en-1-yl)-2-thioxodihydropyrimidine-4,6(1H,5H)-dione
-
33% inhibition at 0.01 mM
(5Z)-1-(3-bromophenyl)-5-(furan-2-ylmethylidene)-2-thioxodihydropyrimidine-4,6(1H,5H)-dione
-
17% inhibition at 0.01 mM
(5Z)-3-(1,1-dioxidotetrahydrothiophen-3-yl)-5-[[1-phenyl-3-(thiophen-2-yl)-1H-pyrazol-4-yl]methylidene]-2-thioxo-1,3-thiazolidin-4-one
-
13% inhibition at 0.01 mM
(5Z)-5-(3-iodo-4-methoxybenzylidene)-2-thioxo-1,3-thiazolidin-4-one
-
29% inhibition at 0.01 mM
(5Z)-5-[(3-methylthiophen-2-yl)methylidene]-3-(1-phenylethyl)-2-thioxo-1,3-thiazolidin-4-one
-
13% inhibition at 0.01 mM
(5Z)-5-[(3-methylthiophen-2-yl)methylidene]-3-(tetrahydrofuran-2-ylmethyl)-2-thioxo-1,3-thiazolidin-4-one
-
14% inhibition at 0.01 mM
(5Z)-5-[(6-bromo-1,3-benzodioxol-5-yl)methylidene]-2-(4-methylphenyl)-1,3-thiazol-4(5H)-one
-
13% inhibition at 0.01 mM
(5Z)-5-[5-(2-chlorobenzyl)-2-hydroxybenzylidene]-3-ethyl-2-thioxo-1,3-thiazolidin-4-one
(5Z)-5-[[5-(2-bromo-4-nitrophenyl)furan-2-yl]methylidene]-2-imino-1,3-thiazolidin-4-one
-
13% inhibition at 0.01 mM
(5Z)-5-[[5-(3-chlorophenyl)furan-2-yl]methylidene]-1-(4-methoxyphenyl)pyrimidine-2,4,6(1H,3H,5H)-trione
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20% inhibition at 0.01 mM
(Z)-3-amino-5-(4-methoxybenzylidene)-2-thioxothiazolidin-4-one
-
-
(Z)-3-ethyl-5-(2-hydroxybenzylidene)-2-thioxothiazolidin-4-one
-
-
(Z)-3-ethyl-5-(4-methoxybenzylidene)-2-thioxothiazolidin-4-one
-
-
(Z)-3-ethyl-5-(naphthalen-1-ylmethylene)-2-thioxothiazolidin-4-one
-
-
(Z)-3-ethyl-5-(quinolin-5-ylmethylene)-2-thioxothiazolidin-4-one
-
-
(Z)-5-(2-hydroxybenzylidene)-2-thioxothiazolidin-4-one
-
-
(Z)-5-(4-(dimethylamino)benzylidene)-2-thioxothiazolidin-4-one
-
-
(Z)-5-(4-chlorobenzylidene)-2-thioxothiazolidin-4-one
-
-
(Z)-5-(4-chlorobenzylidene)-3-ethyl-2-thioxothiazolidin-4-one
-
-
(Z)-5-(4-methoxybenzylidene)-2-thioxothiazolidin-4-one
-
-
(Z)-5-benzylidene-3-ethyl-2-thioxothiazolidin-4-one
-
-
(Z)-N -(5-((5-(4-nitrophenyl)furan-2-yl)methylene)-4-oxo-2-thioxothiazolidin-3-yl)acetamide
-
-
(Z)-N-(5-(4-methoxybenzylidene)-4-oxo-2-thioxothiazolidin-3-yl)acetamide
-
-
1,3-dimethyl-5-[[1-(3-nitrophenyl)-1H-pyrrol-2-yl]methylidene]pyrimidine-2,4,6(1H,3H,5H)-trione
-
13% inhibition at 0.01 mM
1-(4-fluorophenyl)-2-[[4-phenyl-5-(3,4,5-trimethoxyphenyl)-4H-1,2,4-triazol-3-yl]sulfanyl]ethanone
-
14% inhibition at 0.01 mM
2-(2-[(E)-[1-(4-fluorophenyl)-2,4,6-trioxotetrahydropyrimidin-5(2H)-ylidene]methyl]-1H-indol-1-yl)-N-phenylacetamide
-
18% inhibition at 0.01 mM
2-thioxo-5-[(1,2,5-trimethyl-1H-pyrrol-3-yl)methylidene]dihydropyrimidine-4,6(1H,5H)-dione
2-[(2E)-2-(2-oxo-5-phenylfuran-3(2H)-ylidene)hydrazinyl]benzoic acid
-
16% inhibition at 0.01 mM
2-[2-[(E)-(4,6-dioxo-1-phenyl-2-thioxotetrahydropyrimidin-5(2H)-ylidene)methyl]-1H-indol-1-yl]-N-phenylacetamide
3-cyclopropyl-N'-[(1E)-1-(4-methylphenyl)ethylidene]-1H-pyrazole-5-carbohydrazide
-
14% inhibition at 0.01 mM
3-[2-[(4-acetylphenyl)amino]-1,3-thiazol-4-yl]-2H-chromen-2-one
-
16% inhibition at 0.01 mM
4-chloro-N-[5-fluoro-2-(hydrazinylcarbonyl)phenyl]benzenesulfonamide
-
-
4-fluoro-N-[5-fluoro-2-(hydrazinylcarbonyl)phenyl]benzenesulfonamide
-
-
4-[(E)-[2-(2-chlorophenyl)-5-oxo-1,3-oxazol-4(5H)-ylidene]methyl]-2-hydroxyphenyl 2-chlorobenzoate
-
30% inhibition at 0.01 mM
5-(4-methylphenyl)-4-[[(E)-(2,4,5-trimethoxyphenyl)methylidene]amino]-4H-1,2,4-triazole-3-thiol
-
18% inhibition at 0.01 mM
5-([1-[2-(3,4-dimethylphenoxy)ethyl]-1H-indol-2-yl]methylidene)pyrimidine-2,4,6(1H,3H,5H)-trione
-
28% inhibition at 0.01 mM
5-[(5-hydroxy-1-phenyl-1H-pyrazol-4-yl)methylidene]-1,3-dimethylpyrimidine-2,4,6(1H,3H,5H)-trione
-
20% inhibition at 0.01 mM
5-[3-[(2-chlorobenzyl)oxy]-4-methoxybenzylidene]-2-thioxodihydropyrimidine-4,6(1H,5H)-dione
-
48% inhibition at 0.01 mM
8-methoxy-3-[(2-methylprop-2-en-1-yl)oxy]-6H-benzo[c]chromen-6-one
-
25% inhibition at 0.01 mM
ethyl (5Z)-5-[[4-(dimethylamino)phenyl]methylidene]-2-[(4-methoxyphenyl)amino]-4-oxo-4,5-dihydrothiophene-3-carboxylate
-
22% inhibition at 0.01 mM
ethyl (5Z)-5-[[4-(dimethylamino)phenyl]methylidene]-2-[(4-nitrophenyl)amino]-4-oxo-4,5-dihydrothiophene-3-carboxylate
-
19% inhibition at 0.01 mM
ethyl 4-(5-[(Z)-[2,4,6-trioxo-1-(prop-2-en-1-yl)tetrahydropyrimidin-5(2H)-ylidene]methyl]furan-2-yl)benzoate
-
16% inhibition at 0.01 mM
N'-[(E)-(2,4-dihydroxyphenyl)methylidene]-5-nitro-3-phenyl-1H-indole-2-carbohydrazide
-
15% inhibition at 0.01 mM
N'-[(Z)-(4-fluorophenyl)methylidene]-3-(naphthalen-2-yl)-1H-pyrazole-5-carbohydrazide
-
14% inhibition at 0.01 mM
N-[(2E,5Z)-5-[[5-(4-nitrophenyl)furan-2-yl]methylidene]-4-oxo-1,3-thiazolidin-2-ylidene]acetamide
-
52% inhibition at 0.01 mM
N-[(5E)-5-[(5-bromofuran-2-yl)methylidene]-4-oxo-2-thioxo-1,3-thiazolidin-3-yl]acetamide
-
13% inhibition at 0.01 mM
N-[(5Z)-5-[(5-bromofuran-2-yl)methylidene]-4-oxo-2-thioxo-1,3-thiazolidin-3-yl]acetamide
-
-
N-[2-(hydrazinylcarbonyl)-4,5-dimethoxyphenyl]benzenesulfonamide
-
-
N-[2-(hydrazinylcarbonyl)-5-(trifluoromethyl)phenyl]benzenesulfonamide
-
-
N-[2-(hydrazinylcarbonyl)-5-methoxyphenyl]benzenesulfonamide
-
-
N-[2-(hydrazinylcarbonyl)-5-methylphenyl]benzenesulfonamide
-
-
N-[2-(hydrazinylcarbonyl)phenyl]benzenesulfonamide
-
-
N-[3-(hydrazinylcarbonyl)naphthalen-2-yl]benzenesulfonamide
N-[3-[(2,5-dimethoxyphenyl)amino]quinoxalin-2-yl]-3-nitrobenzenesulfonamide
-
13% inhibition at 0.01 mM
N-[4,5-difluoro-2-(hydrazinylcarbonyl)phenyl]benzenesulfonamide
-
-
N-[5-chloro-2-(hydrazinylcarbonyl)phenyl]benzenesulfonamide
-
-
N-[5-fluoro-2-(hydrazinylcarbonyl)phenyl]-4-methoxybenzenesulfonamide
-
-
N-[5-fluoro-2-(hydrazinylcarbonyl)phenyl]-4-methylbenzenesulfonamide
-
-
N-[5-fluoro-2-(hydrazinylcarbonyl)phenyl]benzenesulfonamide
-
-
N-[[2-(2-chlorophenyl)-1,3-benzoxazol-5-yl]carbamothioyl]-3-methyl-1-benzofuran-2-carboxamide
-
19% inhibition at 0.01 mM
additional information
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.42 - 8.7
2-oxoglutarate
0.038
L-2-amino-6-oxopimelate
-
pH 7.5, 30°C
0.9 - 1.9
L-glutamate
1.1 - 4
LL-2,6-Diaminoheptanedioate
0.067
LL-2,6-Diaminopimelate
-
pH 7.5, 30°C
0.0828 - 0.3
LL-diaminopimelate
0.1
tetrahydrodipicolinate
-
pH 7.6, 30°C
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
1.6 - 16.4
LL-2,6-Diaminoheptanedioate
0.31 - 19
LL-diaminopimelate
1.1
tetrahydrodipicolinate
Chlamydomonas reinhardtii
-
pH 7.6, 30°C
kcat/KM VALUE [1/mMs-1]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.4 - 6.1
LL-2,6-Diaminoheptanedioate
4263
IC50 VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.065
(2-[(E)-[1-(4-chlorophenyl)-2,4,6-trioxotetrahydropyrimidin-5(2H)-ylidene]methyl]-1H-indol-1-yl)acetic acid
Arabidopsis thaliana
-
-
0.037 - 0.048
(2-[(E)-[1-(4-methylphenyl)-2,4,6-trioxotetrahydropyrimidin-5(2H)-ylidene]methyl]-1H-indol-1-yl)acetic acid
0.037
(2-[(E)-[1-methyl-3-(4-methylphenyl)-2,4,6-trioxotetrahydropyrimidin-5(2H)-ylidene]methyl]-1H-indol-1-yl)acetic acid
Arabidopsis thaliana
-
-
0.2
(2E)-2-cyano-3-[5-(dimethylamino)furan-2-yl]-N-(3,4-dimethylphenyl)prop-2-enamide
Arabidopsis thaliana
-
IC50 above 0.2 mM
0.2
(2Z)-N'-nitro-2-[[5-(3-nitrophenyl)furan-2-yl]methylidene]hydrazinecarboximidamide
Arabidopsis thaliana
-
IC50 above 0.2 mM
0.194
(3E)-1-[(4-methoxyphenyl)sulfonyl]-3-[4-oxo-3-(prop-2-en-1-yl)-2-thioxo-1,3-thiazolidin-5-ylidene]-1,3-dihydro-2H-indol-2-one
Arabidopsis thaliana
-
-
0.07
(3E)-1-[(4-methylphenyl)sulfonyl]-3-(4-oxo-2-thioxo-1,3-thiazolidin-5-ylidene)-1,3-dihydro-2H-indol-2-one
Arabidopsis thaliana
-
-
0.056
(3E)-3-[2-(2,4-dimethyl-1,3-thiazol-5-yl)-2-oxoethylidene]-3,4-dihydroquinoxalin-2(1H)-one
Arabidopsis thaliana
-
-
0.031
(3E)-3-[2-oxo-2-(thiophen-2-yl)ethylidene]-3,4-dihydroquinoxalin-2(1H)-one
Arabidopsis thaliana
-
-
0.159
(3Z)-3-(2,4-dimethoxybenzylidene)-5-phenylfuran-2(3H)-one
Arabidopsis thaliana
-
-
0.164
(5E)-5-(1H-indol-2-ylmethylidene)-1-(4-methylphenyl)-2-thioxodihydropyrimidine-4,6(1H,5H)-dione
Arabidopsis thaliana
-
-
0.062
(5E)-5-[(1-benzyl-1H-indol-2-yl)methylidene]-1-(2-methoxyphenyl)-2-thioxodihydropyrimidine-4,6(1H,5H)-dione
Arabidopsis thaliana
-
-
0.075
(5E)-5-[(1-methyl-1H-indol-2-yl)methylidene]-1-(prop-2-en-1-yl)-2-thioxodihydropyrimidine-4,6(1H,5H)-dione
Arabidopsis thaliana
-
-
0.033
(5E)-5-[(1-methyl-1H-indol-2-yl)methylidene]-1-prop-2-en-1-yl-2-thioxodihydropyrimidine-4,6(1H,5H)-dione
Arabidopsis thaliana
-
-
0.069
(5E)-5-[[1-(4-nitrobenzyl)-1H-indol-2-yl]methylidene]-1-(prop-2-en-1-yl)-2-thioxodihydropyrimidine-4,6(1H,5H)-dione
Arabidopsis thaliana
-
-
0.2
(5Z)-1-(3-bromophenyl)-5-(furan-2-ylmethylidene)-2-thioxodihydropyrimidine-4,6(1H,5H)-dione
Arabidopsis thaliana
-
-
0.117
(5Z)-3-(1,1-dioxidotetrahydrothiophen-3-yl)-5-[[1-phenyl-3-(thiophen-2-yl)-1H-pyrazol-4-yl]methylidene]-2-thioxo-1,3-thiazolidin-4-one
Arabidopsis thaliana
-
-
0.18
(5Z)-5-(3-iodo-4-methoxybenzylidene)-2-thioxo-1,3-thiazolidin-4-one
Arabidopsis thaliana
-
-
0.127
(5Z)-5-[(3-methylthiophen-2-yl)methylidene]-3-(1-phenylethyl)-2-thioxo-1,3-thiazolidin-4-one
Arabidopsis thaliana
-
-
0.2
(5Z)-5-[(3-methylthiophen-2-yl)methylidene]-3-(tetrahydrofuran-2-ylmethyl)-2-thioxo-1,3-thiazolidin-4-one
Arabidopsis thaliana
-
IC50 above 0.2 mM
0.13
(5Z)-5-[(6-bromo-1,3-benzodioxol-5-yl)methylidene]-2-(4-methylphenyl)-1,3-thiazol-4(5H)-one
Arabidopsis thaliana
-
-
0.046 - 0.25
(5Z)-5-[5-(2-chlorobenzyl)-2-hydroxybenzylidene]-3-ethyl-2-thioxo-1,3-thiazolidin-4-one
0.085
(5Z)-5-[[5-(2-bromo-4-nitrophenyl)furan-2-yl]methylidene]-2-imino-1,3-thiazolidin-4-one
Arabidopsis thaliana
-
-
0.042
(5Z)-5-[[5-(3-chlorophenyl)furan-2-yl]methylidene]-1-(4-methoxyphenyl)pyrimidine-2,4,6(1H,3H,5H)-trione
Arabidopsis thaliana
-
-
0.155
(Z)-3-amino-5-(4-methoxybenzylidene)-2-thioxothiazolidin-4-one
Arabidopsis thaliana
-
in 100 mM HEPES-KOH, pH 7.6
0.2
(Z)-3-ethyl-5-(2-hydroxybenzylidene)-2-thioxothiazolidin-4-one
Arabidopsis thaliana
-
IC50 above 0.2 mM, in 100 mM HEPES-KOH, pH 7.6
0.2
(Z)-3-ethyl-5-(4-methoxybenzylidene)-2-thioxothiazolidin-4-one
Arabidopsis thaliana
-
IC50 above 0.2 mM, in 100 mM HEPES-KOH, pH 7.6
0.2
(Z)-3-ethyl-5-(naphthalen-1-ylmethylene)-2-thioxothiazolidin-4-one
Arabidopsis thaliana
-
IC50 above 0.2 mM,in 100 mM HEPES-KOH, pH 7.6
0.19
(Z)-3-ethyl-5-(quinolin-5-ylmethylene)-2-thioxothiazolidin-4-one
Arabidopsis thaliana
-
in 100 mM HEPES-KOH, pH 7.6
0.2
(Z)-5-(2-hydroxybenzylidene)-2-thioxothiazolidin-4-one
Arabidopsis thaliana
-
IC50 above 0.2 mM, in 100 mM HEPES-KOH, pH 7.6
0.127
(Z)-5-(4-(dimethylamino)benzylidene)-2-thioxothiazolidin-4-one
Arabidopsis thaliana
-
in 100 mM HEPES-KOH, pH 7.6
0.2
(Z)-5-(4-chlorobenzylidene)-2-thioxothiazolidin-4-one
Arabidopsis thaliana
-
IC50 above 0.2 mM, in 100 mM HEPES-KOH, pH 7.6
0.2
(Z)-5-(4-chlorobenzylidene)-3-ethyl-2-thioxothiazolidin-4-one
Arabidopsis thaliana
-
IC50 above 0.2 mM, in 100 mM HEPES-KOH, pH 7.6
0.142
(Z)-5-(4-methoxybenzylidene)-2-thioxothiazolidin-4-one
Arabidopsis thaliana
-
in 100 mM HEPES-KOH, pH 7.6
0.2
(Z)-5-benzylidene-3-ethyl-2-thioxothiazolidin-4-one
Arabidopsis thaliana
-
IC50 above 0.2 mM, in 100 mM HEPES-KOH, pH 7.6
0.073
(Z)-N -(5-((5-(4-nitrophenyl)furan-2-yl)methylene)-4-oxo-2-thioxothiazolidin-3-yl)acetamide
Arabidopsis thaliana
-
in 100 mM HEPES-KOH, pH 7.6
0.2
(Z)-N-(5-(4-methoxybenzylidene)-4-oxo-2-thioxothiazolidin-3-yl)acetamide
Arabidopsis thaliana
-
IC50 above 0.2 mM, in 100 mM HEPES-KOH, pH 7.6
0.2
1,3-dimethyl-5-[[1-(3-nitrophenyl)-1H-pyrrol-2-yl]methylidene]pyrimidine-2,4,6(1H,3H,5H)-trione
Arabidopsis thaliana
-
IC50 above 0.2 mM
0.2
1-(4-fluorophenyl)-2-[[4-phenyl-5-(3,4,5-trimethoxyphenyl)-4H-1,2,4-triazol-3-yl]sulfanyl]ethanone
Arabidopsis thaliana
-
IC50 above 0.2 mM
0.052
2-(2-[(E)-[1-(4-fluorophenyl)-2,4,6-trioxotetrahydropyrimidin-5(2H)-ylidene]methyl]-1H-indol-1-yl)-N-phenylacetamide
Arabidopsis thaliana
-
-
0.025 - 0.057
2-thioxo-5-[(1,2,5-trimethyl-1H-pyrrol-3-yl)methylidene]dihydropyrimidine-4,6(1H,5H)-dione
0.039
2-[(2E)-2-(2-oxo-5-phenylfuran-3(2H)-ylidene)hydrazinyl]benzoic acid
Arabidopsis thaliana
-
-
0.025 - 0.033
2-[2-[(E)-(4,6-dioxo-1-phenyl-2-thioxotetrahydropyrimidin-5(2H)-ylidene)methyl]-1H-indol-1-yl]-N-phenylacetamide
0.2
3-cyclopropyl-N'-[(1E)-1-(4-methylphenyl)ethylidene]-1H-pyrazole-5-carbohydrazide
Arabidopsis thaliana
-
IC50 above 0.2 mM
0.2
3-[2-[(4-acetylphenyl)amino]-1,3-thiazol-4-yl]-2H-chromen-2-one
Arabidopsis thaliana
-
IC50 above 0.2 mM
0.0053
4-chloro-N-[5-fluoro-2-(hydrazinylcarbonyl)phenyl]benzenesulfonamide
Arabidopsis thaliana
-
pH not specified in the publication, temperature not specified in the publication
0.0075
4-fluoro-N-[5-fluoro-2-(hydrazinylcarbonyl)phenyl]benzenesulfonamide
Arabidopsis thaliana
-
pH not specified in the publication, temperature not specified in the publication
0.081
4-[(E)-[2-(2-chlorophenyl)-5-oxo-1,3-oxazol-4(5H)-ylidene]methyl]-2-hydroxyphenyl 2-chlorobenzoate
Arabidopsis thaliana
-
-
0.2
5-(4-methylphenyl)-4-[[(E)-(2,4,5-trimethoxyphenyl)methylidene]amino]-4H-1,2,4-triazole-3-thiol
Arabidopsis thaliana
-
IC50 above 0.2 mM
0.099
5-([1-[2-(3,4-dimethylphenoxy)ethyl]-1H-indol-2-yl]methylidene)pyrimidine-2,4,6(1H,3H,5H)-trione
Arabidopsis thaliana
-
-
0.045
5-[(5-hydroxy-1-phenyl-1H-pyrazol-4-yl)methylidene]-1,3-dimethylpyrimidine-2,4,6(1H,3H,5H)-trione
Arabidopsis thaliana
-
-
0.121
5-[3-[(2-chlorobenzyl)oxy]-4-methoxybenzylidene]-2-thioxodihydropyrimidine-4,6(1H,5H)-dione
Arabidopsis thaliana
-
-
0.2
8-methoxy-3-[(2-methylprop-2-en-1-yl)oxy]-6H-benzo[c]chromen-6-one
Arabidopsis thaliana
-
IC50 above 0.2 mM
0.2
ethyl (5Z)-5-[[4-(dimethylamino)phenyl]methylidene]-2-[(4-methoxyphenyl)amino]-4-oxo-4,5-dihydrothiophene-3-carboxylate
Arabidopsis thaliana
-
IC50 above 0.2 mM
0.141
ethyl (5Z)-5-[[4-(dimethylamino)phenyl]methylidene]-2-[(4-nitrophenyl)amino]-4-oxo-4,5-dihydrothiophene-3-carboxylate
Arabidopsis thaliana
-
-
0.2
ethyl 4-(5-[(Z)-[2,4,6-trioxo-1-(prop-2-en-1-yl)tetrahydropyrimidin-5(2H)-ylidene]methyl]furan-2-yl)benzoate
Arabidopsis thaliana
-
IC50 above 0.2 mM
0.045
N'-[(E)-(2,4-dihydroxyphenyl)methylidene]-5-nitro-3-phenyl-1H-indole-2-carbohydrazide
Arabidopsis thaliana
-
-
0.161
N'-[(Z)-(4-fluorophenyl)methylidene]-3-(naphthalen-2-yl)-1H-pyrazole-5-carbohydrazide
Arabidopsis thaliana
-
-
0.078
N-[(2E,5Z)-5-[[5-(4-nitrophenyl)furan-2-yl]methylidene]-4-oxo-1,3-thiazolidin-2-ylidene]acetamide
Arabidopsis thaliana
-
-
0.041
N-[(5E)-5-[(5-bromofuran-2-yl)methylidene]-4-oxo-2-thioxo-1,3-thiazolidin-3-yl]acetamide
Arabidopsis thaliana
-
-
0.041
N-[(5Z)-5-[(5-bromofuran-2-yl)methylidene]-4-oxo-2-thioxo-1,3-thiazolidin-3-yl]acetamide
Arabidopsis thaliana
-
pH not specified in the publication, temperature not specified in the publication
0.0207
N-[2-(hydrazinylcarbonyl)-4,5-dimethoxyphenyl]benzenesulfonamide
Arabidopsis thaliana
-
pH not specified in the publication, temperature not specified in the publication
0.0038
N-[2-(hydrazinylcarbonyl)-5-(trifluoromethyl)phenyl]benzenesulfonamide
Arabidopsis thaliana
-
pH not specified in the publication, temperature not specified in the publication
0.0045
N-[2-(hydrazinylcarbonyl)-5-methoxyphenyl]benzenesulfonamide
Arabidopsis thaliana
-
pH not specified in the publication, temperature not specified in the publication
0.0079
N-[2-(hydrazinylcarbonyl)-5-methylphenyl]benzenesulfonamide
Arabidopsis thaliana
-
pH not specified in the publication, temperature not specified in the publication
0.0132
N-[2-(hydrazinylcarbonyl)phenyl]benzenesulfonamide
Arabidopsis thaliana
-
pH not specified in the publication, temperature not specified in the publication
0.005 - 0.047
N-[3-(hydrazinylcarbonyl)naphthalen-2-yl]benzenesulfonamide
0.153
N-[3-[(2,5-dimethoxyphenyl)amino]quinoxalin-2-yl]-3-nitrobenzenesulfonamide
Arabidopsis thaliana
-
-
0.0059
N-[4,5-difluoro-2-(hydrazinylcarbonyl)phenyl]benzenesulfonamide
Arabidopsis thaliana
-
pH not specified in the publication, temperature not specified in the publication
0.0041
N-[5-chloro-2-(hydrazinylcarbonyl)phenyl]benzenesulfonamide
Arabidopsis thaliana
-
pH not specified in the publication, temperature not specified in the publication
0.0034
N-[5-fluoro-2-(hydrazinylcarbonyl)phenyl]-4-methoxybenzenesulfonamide
Arabidopsis thaliana
-
pH not specified in the publication, temperature not specified in the publication
0.0056
N-[5-fluoro-2-(hydrazinylcarbonyl)phenyl]-4-methylbenzenesulfonamide
Arabidopsis thaliana
-
pH not specified in the publication, temperature not specified in the publication
0.0025
N-[5-fluoro-2-(hydrazinylcarbonyl)phenyl]benzenesulfonamide
Arabidopsis thaliana
-
pH not specified in the publication, temperature not specified in the publication
0.083
N-[[2-(2-chlorophenyl)-1,3-benzoxazol-5-yl]carbamothioyl]-3-methyl-1-benzofuran-2-carboxamide
Arabidopsis thaliana
-
-
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
0.39
-
pH 8.5, 70°C
0.68
-
substrates glutamate and tetrahydrodipicolinate, pH 7.6, 30°C
0.7
-
substrate tetrahydrodipicolinate, pH not specified in the publication, temperature not specified in the publication
11.6
-
substrates LL-diaminopimelate and 2-oxoglutarate, pH 7.6, 30°C
12
-
substrate L,L-diaminopimelate, pH not specified in the publication, temperature not specified in the publication
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
7.6
-
with HEPES/KOH buffer
7.9
-
with Tris/HCl buffer
pH RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
6 - 10
-
about 40% activity at pH 6.0, about 50% activity at pH 10.0
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
TEMPERATURE RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
47900
-
for the protomer
50000
-
2 * 50000, SDS-PAGE, analytical ultracentrifugation
51000
-
x * 51000, SDS-PAGE
100200
-
analytical ultracentrifugation
SUBUNITS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
?
-
x * 51000, SDS-PAGE
homodimer
POSTTRANSLATIONAL MODIFICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
additional information
-
sequence contains a 36 amino acid transit peptide for plastidial localization
Crystallization/COMMENTARY
ORGANISM
UNIPROT
LITERATURE
to 2.3 A resolution. The large donain (Pro85–Ser338) consists of 254 residues and has an alpha-beta-alpha sandwich fold. The large domain includes both the pyridoxal phosphate-binding site and the dimerization site. The small domain is composed of the remaining residues, Gly34–Ile84 and Ser339–Thr441. The small domain has an alpha/beta architecture, with a beta-sheet surrounded by two outer layers alpha-helices
Arabidopsis thaiana
; hanging drop vapour diffusion method at room temperature, 1.95 A resolution. The structure of AtDAP-AT is determined using the multiple-wavelength anomalous dispersion method with a seleno-methionine derivative
-
in complex with N-(5'-phosphopyridoxyl)-L-glutamate and N-(5'-phosphopyridoxyl)-LL-diaminopimelate, hanging drop vapor diffusion method, using 45% (w/v) (NH4)2SO4, 0.1 M HEPES pH 7.5, 3% (w/v) PEG400
-
sitting-drop vapor diffusion methodPEG 6000
-
modeling of structure based on the structure of the Arabidopsis thaliana enzyme and comparison between strucutre of Arabidopsis thaliana, from Leptospira interrogans, Verrucomicrobium spinosum and Chlamydomonas reinhardtii enzymes
-
PEG 3350, sitting drop method
-
sitting-drop vapour-diffusion method, PEG 3350
-
modeling of structure based on the structure of the Arabidopsis thaliana enzyme and comparison between strucutre of Arabidopsis thaliana, from Leptospira interrogans, Verrucomicrobium spinosum and Chlamydomonas reinhardtii enzymes
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
100
-
pH 8.5, at least for 30 min
Purification/COMMENTARY
ORGANISM
UNIPROT
LITERATURE
cell extract for 10 min at 70°C, centrifugation, anion-exchange chromatography
-
immobilized metal ion affinity chromatography
immobilized metal ion affinity chromatography (Ni2+), gel filtration
immobilized metal ion affinity chromatography, gel filtration
-
Cloned/COMMENTARY
ORGANISM
UNIPROT
LITERATURE
cDNA sequence of LL-DAP-AT from Arabidopsis thaliana is optimized for expression in bacteria and cloned in Escherichia coli without its leader sequence but with a C-terminal hexahistidine affinity tag to aid protein purification; cloned in Escherichia coli without its leader sequence but with a C-terminal hexahistidine affinity tag to aid protein purification
-
DNA chemically synthesized, His-tagged protein expressed in Escherichia coli M15(pREP4) and Escherichia coli BL21(DE3)
-
expressed in Escherichia coli
-
expressed in Escherichia coli Origami 2(DE3), also used in complementation experiments
-
expression in Escheirchia coli
His-tagged protein (amino acid residue 21-456) expressed in Escherichia coli BL21(DE3)
His-tagged protein expressed in Escherichia coli BL21-CodonPlus-RIPL, also used in functional complementation experiments
-
S- and His-tagged protein expressed in Escherichia coli BL21-CodonPlus-RIPL
-
S- and His-tagged protein expressed in Escherichia coli BL21-CodonPlus-RIPL, also used in complementation experiments
-
ENGINEERING
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
K270N
-
catalytically inactive mutant
K270Q
-
catalytically inactive mutant
Show AA Sequence (2061 entries)
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