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Reference on EC 1.14.11.33 - DNA oxidative demethylase

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REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Yi, C.; Yang, C.G.; He, C.
A non-heme iron-mediated chemical demethylation in DNA and RNA
Acc. Chem. Res.
42
519-529
2009
Escherichia coli, Homo sapiens
Manually annotated by BRENDA team
Mishina, Y.; Chen, L.X.; He, C.
Preparation and characterization of the native iron(II)-containing DNA repair AlkB protein directly from Escherichia coli
J. Am. Chem. Soc.
126
16930-16936
2004
Escherichia coli
Manually annotated by BRENDA team
Koivisto, P.; Duncan, T.; Lindahl, T.; Sedgwick, B.
Minimal methylated substrate and extended substrate range of Escherichia coli AlkB protein, a 1-methyladenine-DNA dioxygenase
J. Biol. Chem.
278
44348-44354
2003
Escherichia coli, Homo sapiens
Manually annotated by BRENDA team
Koivisto, P.; Robins, P.; Lindahl, T.; Sedgwick, B.
Demethylation of 3-methylthymine in DNA by bacterial and human DNA dioxygenases
J. Biol. Chem.
279
40470-40474
2004
Escherichia coli, Homo sapiens
Manually annotated by BRENDA team
Sedgwick, B.; Robins, P.; Lindahl, T.
Direct removal of alkylation damage from DNA by AlkB and related DNA dioxygenases
Methods Enzymol.
408
108-120
2006
Escherichia coli (P05050), Homo sapiens (Q6NS38), Homo sapiens (Q96Q83)
Manually annotated by BRENDA team
Ougland, R.; Zhang, C.M.; Liiv, A.; Johansen, R.F.; Seeberg, E.; Hou, Y.M.; Remme, J.; Falnes, P.O.
AlkB restores the biological function of mRNA and tRNA inactivated by chemical methylation
Mol. Cell
16
107-116
2004
Escherichia coli, Homo sapiens
Manually annotated by BRENDA team
Trewick, S.C.; Henshaw, T.F.; Hausinger, R.P.; Lindahl, T.; Sedgwick, B.
Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage
Nature
419
174-178
2002
Escherichia coli
Manually annotated by BRENDA team
Falnes, P.O.; Johansen, R.F.; Seeberg, E.
AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli
Nature
419
178-182
2002
Escherichia coli, Escherichia coli W3110 / ATCC 27325
Manually annotated by BRENDA team
Aas, P.A.; Otterlei, M.; Falnes, P.O.; Vagbo, C.B.; Skorpen, F.; Akbari, M.; Sundheim, O.; Bjoras, M.; Slupphaug, G.; Seeberg, E.; Krokan, H.E.
Human and bacterial oxidative demethylases repair alkylation damage in both RNA and DNA
Nature
421
859-863
2003
Escherichia coli, Homo sapiens, Homo sapiens (Q96Q83)
Manually annotated by BRENDA team
Yi, C.; Jia, G.; Hou, G.; Dai, Q.; Zhang, W.; Zheng, G.; Jian, X.; Yang, C.G.; Cui, Q.; He, C.
Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase
Nature
468
330-333
2010
Escherichia coli (P05050)
Manually annotated by BRENDA team
Mishina, Y.; Lee, C.H.; He, C.
Interaction of human and bacterial AlkB proteins with DNA as probed through chemical cross-linking studies
Nucleic Acids Res.
32
1548-1554
2004
Escherichia coli, Homo sapiens
Manually annotated by BRENDA team
Falnes, P.O.; Bjoras, M.; Aas, P.A.; Sundheim, O.; Seeberg, E.
Substrate specificities of bacterial and human AlkB proteins
Nucleic Acids Res.
32
3456-3461
2004
Escherichia coli, Homo sapiens
Manually annotated by BRENDA team
Falnes, P.O.
Repair of 3-methylthymine and 1-methylguanine lesions by bacterial and human AlkB proteins
Nucleic Acids Res.
32
6260-6267
2004
Escherichia coli, Homo sapiens
Manually annotated by BRENDA team
Roy, T.W.; Bhagwat, A.S.
Kinetic studies of Escherichia coli AlkB using a new fluorescence-based assay for DNA demethylation
Nucleic Acids Res.
35
e147
2007
Escherichia coli
Manually annotated by BRENDA team
van den Born, E.; Omelchenko, M.V.; Bekkelund, A.; Leihne, V.; Koonin, E.V.; Dolja, V.V.; Falnes, P.?.
Viral AlkB proteins repair RNA damage by oxidative demethylation
Nucleic Acids Res.
36
5451-5461
2008
Escherichia coli, blueberry scorch virus, Blackberry virus Y, grapevine virus A
Manually annotated by BRENDA team
Begley, T.J.; Samson, L.D.
AlkB mystery solved: oxidative demethylation of N1-methyladenine and N3-methylcytosine adducts by a direct reversal mechanism
Trends Biochem. Sci.
28
2-5
2003
Escherichia coli
Manually annotated by BRENDA team
Duncan, T.; Trewick, S.C.; Koivisto, P.; Bates, P.A.; Lindahl, T.; Sedgwick, B.
Reversal of DNA alkylation damage by two human dioxygenases
Proc. Natl. Acad. Sci. USA
99
16660-5
2002
Homo sapiens
Manually annotated by BRENDA team
Li, P.; Gao, S.; Wang, L.; Yu, F.; Li, J.; Wang, C.; Li, J.; Wong, J.
ABH2 couples regulation of ribosomal DNA transcription with DNA alkylation repair
Cell Rep.
4
817-829
2013
Homo sapiens
Manually annotated by BRENDA team
Vagbo, C.B.; Svaasand, E.K.; Aas, P.A.; Krokan, H.E.
Methylation damage to RNA induced in vivo in Escherichia coli is repaired by endogenous AlkB as part of the adaptive response
DNA Repair
12
188-195
2013
Escherichia coli, Escherichia coli AB1157
Manually annotated by BRENDA team
Li, D.; Delaney, J.C.; Page, C.M.; Yang, X.; Chen, A.S.; Wong, C.; Drennan, C.L.; Essigmann, J.M.
Exocyclic carbons adjacent to the N6 of adenine are targets for oxidation by the Escherichia coli adaptive response protein AlkB
J. Am. Chem. Soc.
134
8896-8901
2012
Escherichia coli
Manually annotated by BRENDA team
Chen, F.; Tang, Q.; Bian, K.; Humulock, Z.; Yang, X.; Jost, M.; Drennan, C.; Essigmann, J.; Li, D.
Adaptive response enzyme AlkB preferentially repairs 1-methylguanine and 3-methylthymine adducts in double-stranded DNA
Chem. Res. Toxicol.
29
687-693
2016
Escherichia coli
Manually annotated by BRENDA team
Beharry, A.A.; Lacoste, S.; OConnor, T.R.; Kool, E.T.
Fluorescence monitoring of the oxidative repair of DNA alkylation damage by ALKBH3, a prostate cancer marker
J. Am. Chem. Soc.
138
3647-3650
2016
Homo sapiens
Manually annotated by BRENDA team
Zhu, C.; Yi, C.
Switching demethylation activities between AlkB family RNA/DNA demethylases through exchange of active-site residues
Angew. Chem. Int. Ed. Engl.
53
3659-3662
2014
Escherichia coli (P05050)
Manually annotated by BRENDA team
Wang, P.; Wu, J.; Ma, S.; Zhang, L.; Yao, J.; Hoadley, K.A.; Wilkerson, M.D.; Perou, C.M.; Guan, K.L.; Ye, D.; Xiong, Y.
Oncometabolite D-2-hydroxyglutarate inhibits ALKBH DNA repair enzymes and sensitizes IDH mutant cells to alkylating agents
Cell Rep.
13
2353-2361
2015
Homo sapiens
Manually annotated by BRENDA team
Wang, B.; Usharani, D.; Li, C.; Shaik, S.
Theory uncovers an unusual mechanism of DNA repair of a lesioned adenine by AlkB enzymes
J. Am. Chem. Soc.
136
13895-13901
2014
Escherichia coli (P05050)
Manually annotated by BRENDA team
Ergel, B.; Gill, M.L.; Brown, L.; Yu, B.; Palmer, A.G.; Hunt, J.F.
Protein dynamics control the progression and efficiency of the catalytic reaction cycle of the Escherichia coli DNA-repair enzyme AlkB
J. Biol. Chem.
289
29584-29601
2014
Escherichia coli
Manually annotated by BRENDA team
Silvestrov, P.; Mueller, T.A.; Clark, K.N.; Hausinger, R.P.; Cisneros, G.A.
Homology modeling, molecular dynamics, and site-directed mutagenesis study of AlkB human homolog 1 (ALKBH1)
J. Mol. Graph. Model.
54
123-130
2014
Homo sapiens
Manually annotated by BRENDA team
Zdzalik, D.; Vagbo, C.B.; Kirpekar, F.; Davydova, E.; Puscian, A.; Maciejewska, A.M.; Krokan, H.E.; Klungland, A.; Tudek, B.; van den Born, E.; Falnes, P.O.
Protozoan ALKBH8 oxygenases display both DNA repair and tRNA modification activities
PLoS ONE
9
e98729
2014
Agrobacterium tumefaciens, Cryptosporidium parvum, Tetrahymena thermophila, Acanthamoeba polyphaga Mimivirus, Rickettsia felis, Roseobacter denitrificans (Q16D46), Roseobacter denitrificans OCh (Q16D46), Agrobacterium tumefaciens C58 / ATCC 33970, Tetrahymena thermophila SB210
Manually annotated by BRENDA team
Tishinov, K.; Gillingham, D.
Synthesis of new alkylated mononucleotide analogues and their repair proficiency by the prokaryotic DNA repair protein AlkB
Synlett
26
2720-2723
2015
Escherichia coli (P05050)
-
Manually annotated by BRENDA team
Soll, J.M.; Sobol, R.W.; Mosammaparast, N.
Regulation of DNA alkylation damage repair lessons and therapeutic opportunities
Trends Biochem. Sci.
42
206-218
2017
Homo sapiens (Q6NS38)
Manually annotated by BRENDA team