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(7-amino-1-methyl-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)acetic acid
-
-
(7-amino-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)acetic acid
-
-
(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylamino)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-glucopyranosylthio)acrylamide
(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylamino)-3-(ethylthio)-acrylamide
(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylamino)-3-mercapto-acrylamide
(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(methylamino)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-glucopyranosylthio)acrylamide
(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-mercapto-3-(methylamino)acrylamide
(E)-3-(allylamino)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl) amino]sulfonyl]phenyl)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-galactopyranosylthio)acrylamide
(E)-3-(allylamino)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-galactopyranosylthio)acrylamide
-
-
(E)-3-(allylamino)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-glucopyranosylthio)acrylamide
(E)-3-(allylamino)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylthio)-acrylamide
2-(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)-N,N-diethylacetamide
-
2-(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)-N,N-dimethylacetamide
-
2-(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)-N-(2-methylpropyl)acetamide
-
2-(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)-N-(3-methylbenzyl)acetamide
-
2-(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)-N-butylacetamide
-
2-(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)-N-cyclohexylacetamide
-
2-(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)-N-cyclopropylacetamide
-
2-(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)-N-ethyl-N-methylpropanamide
-
2-(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)-N-methylacetamide
-
2-(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)-N-phenylacetamide
-
2-(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)-N-tert-butylacetamide
-
2-(7-amino-1-methyl-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)propanoate
-
binding structure, interactions with the DHPS module and the HPPK module, modeling, ovverview
2-(7-amino-1-methyl-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)propanoic acid
2-(7-amino-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)propanoic acid
-
-
2-amino-4-hydroxy-6-hydroxymethyl-dihydropteridine
-
-
2-amino-6-[[4-(4-aminobenzene-1-sulfonyl)anilino]methyl]pteridin-4(1H)-one
-
2-amino-8-(2-hydroxyethyl)-1,9-dihydro-6H-purin-6-one
-
2-amino-8-(2-oxopropyl)-1,9-dihydro-6H-purin-6-one
-
2-amino-8-(3-hydroxypropyl)-1,9-dihydro-6H-purin-6-one
-
2-amino-8-(benzylsulfanyl)-9-methyl-1,9-dihydro-6H-purin-6-one
-
2-amino-8-(methylsulfanyl)-1,9-dihydro-6H-purin-6-one
-
2-amino-8-(morpholin-4-yl)-1,9-dihydro-6H-purin-6-one
-
2-amino-8-(phenylethynyl)-1,9-dihydro-6H-purin-6-one
-
2-amino-8-bromo-1,9-dihydro-6H-purin-6-one
-
2-amino-8-hydroxy-1,9-dihydro-6H-purin-6-one
-
2-amino-8-hydroxy-9-methyl-1,9-dihydro-6H-purin-6-one
-
2-amino-8-methyl-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[(2,3-dimethylbenzyl)sulfanyl]-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[(2,4-difluorobenzyl)sulfanyl]-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[(2,5-dimethylbenzyl)sulfanyl]-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[(2-bromobenzyl)sulfanyl]-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[(2-chlorobenzyl)sulfanyl]-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[(2-fluoro-3-methylbenzyl)sulfanyl]-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[(2-fluoro-5-methylbenzyl)sulfanyl]-9-methyl-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[(2-fluorobenzyl)sulfanyl]-1,9-dihydro-6H-purin-6-one
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2-amino-8-[(2-methylbenzyl)sulfanyl]-1,9-dihydro-6H-purin-6-one
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2-amino-8-[(2-nitrobenzyl)sulfanyl]-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[(3,4-difluorobenzyl)sulfanyl]-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[(3,5-dimethylbenzyl)sulfanyl]-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[(3-methoxybenzyl)sulfanyl]-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[(3-methylbenzyl)sulfanyl]-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[(4-fluoro-2-methylbenzyl)sulfanyl]-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[(4-fluoro-3-methylbenzyl)sulfanyl]-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[(4-fluorobenzyl)sulfanyl]-1,9-dihydro-6H-purin-6-one
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2-amino-8-[(naphthalen-1-ylmethyl)sulfanyl]-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[(naphthalen-2-ylmethyl)sulfanyl]-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[(pyridin-4-ylmethyl)sulfanyl]-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[2-(4-bromophenyl)-2-oxoethyl]-1,9-dihydro-6H-purin-6-one
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2-amino-8-[2-(4-methoxyphenyl)-2-oxoethyl]-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[2-(morpholin-4-yl)-2-oxoethyl]-1,9-dihydro-6H-purin-6-one
-
2-amino-8-[[(6,6-difluorocyclohexa-2,4-dien-1-yl)methyl]sulfanyl]-1,9-dihydro-6H-purin-6-one
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2-amino-9-benzyl-8-sulfanyl-1,9-dihydro-6H-purin-6-one
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2-amino-9-ethyl-8-sulfanyl-1,9-dihydro-6H-purin-6-one
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2-amino-9-methyl-1,9-dihydro-6H-purin-6-one
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2-amino-9-methyl-8-sulfanyl-1,9-dihydro-6H-purin-6-one
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2-amino-9-phenyl-8-sulfanyl-1,9-dihydro-6H-purin-6-one
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2-[(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl]-N-(3-chlorobenzyl)acetamide
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2-[(2-amino-9-methyl-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl]-N-phenylacetamide
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2-[[(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl]methyl]benzonitrile
-
3-(7-amino-1-methyl-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)butanoic acid
-
-
3-(7-amino-1-methyl-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)propanoic acid
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3-(7-amino-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)propanoic acid
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3-[[(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl]methyl]benzonitrile
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4,4-Diaminodiphenyl sulfone
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4-[2-[(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl]ethyl]benzenesulfonamide
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4-[[(2-amino-4-oxo-1,4-dihydropteridin-6-yl)methyl]amino]-N-(2,6-dimethoxypyrimidin-4-yl)benzene-1-sulfonamide
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4-[[(2-amino-4-oxo-1,4-dihydropteridin-6-yl)methyl]amino]-N-(3,4-dimethyl-1,2-oxazol-5-yl)benzene-1-sulfonamide
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4-[[(2-amino-4-oxo-1,4-dihydropteridin-6-yl)methyl]amino]-N-(5,6-dimethoxypyrimidin-4-yl)benzene-1-sulfonamide
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4-[[(2-amino-4-oxo-1,4-dihydropteridin-6-yl)methyl]amino]-N-(5-methyl-1,2-oxazol-3-yl)benzene-1-sulfonamide
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4-[[(2-amino-4-oxo-1,4-dihydropteridin-6-yl)methyl]amino]-N-(pyridin-2-yl)benzene-1-sulfonamide
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4-[[(2-amino-4-oxo-1,4-dihydropteridin-6-yl)methyl]amino]-N-(pyrimidin-2-yl)benzene-1-sulfonamide
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4-[[(2-amino-4-oxo-3,4-dihydropteridin-6-yl)methyl]amino]-N-(3,4-dimethyl-1,2-oxazol-5-yl)benzene-1-sulfonamide
5-nitro-6-methylamino-isocytosine
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6-hydroxymethylpterin monophosphate
6HMP, competitive inhibitor, 6-hydroxymethyl-7,8-dihydropterin diphosphate analogue
6-methylamino-5-nitrosoisocytosine
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7-amino-1-methyl-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazine-3-carboxylic acid
-
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7-amino-3-(1-carboxyethyl)-1-methyl-pyrimido (4,5-c)-pyridazine-4,5(1H,6H)-dione
dapson
KD: 0.2 microM according to molecular modelling
dihydrofolate monoglutamate
-
-
Guanidine HCl
-
0.25 M, 50% inhibition
N-(4-(trifluoromethyl)-benzylidene)-1-(4-(trifluoromethyl))benzylamine
N-(4-[[(2-amino-4-oxo-1,4-dihydropteridin-6-yl)methyl]amino]benzene-1-sulfonyl)acetamide
-
p-aminobenzoylglutamate
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weak
potassium 4-([(2-amino-4-oxo-3,4-dihydro-pyrido[2,3-d]pyrimidin-6-yl)-(2-phosphonoethyl)-amino]-methyl)-benzoate
-
the oxidized analogue shows significant DHPS inhibition and significant antimicrobial activity
potassium 4-([(2-amino-4-oxo-3,4-dihydro-pyrido[2,3-d]pyrimidin-6-yl)-(3-phosphonopropyl)-amino]-methyl)-benzoate
-
the oxidized analogue shows significant DHPS inhibition and significant antimicrobial activity
Pteroate
inhibition of dihydropteroate synthase activity
Pteroic acid
PTA, product analog, binds pterin- and 4-aminobenzoate-binding regions
sulfadoxine-pyrimethamine
-
sulfamethazine
inhibition of dihydropteroate synthase activity
sulfamonomethoxine
inhibition of dihydropteroate synthase activity
sulfamoxisole
-
effective against wild-type enzyme and mutant enzymes A437G/K540E, A437G, S436F/A437G/A613S and S436F/A437G/A613T. Ineffective against A437G/A581G
-
Sulfonamides
-
act as competitive inhibitors with respect to the 4-amino benzoic acid substrate within the DHPS enzyme active site. The 4-amino benzoic acid/sulfonamide binding site is formed close to the protein surface by flexible protein loops facilitating rapid development of sulfonamide resistance. Study of inhibitors designed to target the conserved central pterin binding site within DHPS, molecular dynamics simulation and molecular modeling, overview. Design and synthesis of transition state analogues with ability to mimic the intermediate transient carbocation by the incorporation of a basic amine at the 6-position of the pterin ring
sulfpyridine
-
effective against wild-type enzyme. Ineffective against mutants A437G, A437G/A581G, A437G/K540E, S436F/A437G/A613S and S436F/A437G/A613T
-
tert-butyl (2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)acetate
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tert-butyl 2-(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)propanoate
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tetrahydrofolate monoglutamate
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trimethoprim-sulfamethoxazole
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Trp-Lys
WK, highly potent with KD: 0.23 nM according to structure-based molecular modelling and docking, overlaps with pterin monophosphate and pteroic acid binding regions, highly selective for microbial DHPS compared to human pterin and folate-binding enzymes (dihydrofolate reductase, thymidylate synthase)
Urea
-
0.9 M, 50% inhibition
[(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl](phenyl)acetic acid
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[(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl]acetic acid
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[(2-amino-9-methyl-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl]acetic acid
-
(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylamino)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-glucopyranosylthio)acrylamide
-
-
(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylamino)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-glucopyranosylthio)acrylamide
-
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(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylamino)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-glucopyranosylthio)acrylamide
-
-
(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylamino)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-glucopyranosylthio)acrylamide
-
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(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylamino)-3-(ethylthio)-acrylamide
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(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylamino)-3-(ethylthio)-acrylamide
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(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylamino)-3-(ethylthio)-acrylamide
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(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylamino)-3-(ethylthio)-acrylamide
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(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylamino)-3-mercapto-acrylamide
-
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(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylamino)-3-mercapto-acrylamide
-
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(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylamino)-3-mercapto-acrylamide
-
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(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylamino)-3-mercapto-acrylamide
-
-
(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(methylamino)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-glucopyranosylthio)acrylamide
-
-
(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(methylamino)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-glucopyranosylthio)acrylamide
-
-
(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(methylamino)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-glucopyranosylthio)acrylamide
-
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(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(methylamino)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-glucopyranosylthio)acrylamide
-
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(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-mercapto-3-(methylamino)acrylamide
-
-
(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-mercapto-3-(methylamino)acrylamide
-
-
(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-mercapto-3-(methylamino)acrylamide
-
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(E)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-mercapto-3-(methylamino)acrylamide
-
-
(E)-3-(allylamino)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl) amino]sulfonyl]phenyl)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-galactopyranosylthio)acrylamide
-
-
(E)-3-(allylamino)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl) amino]sulfonyl]phenyl)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-galactopyranosylthio)acrylamide
-
-
(E)-3-(allylamino)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl) amino]sulfonyl]phenyl)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-galactopyranosylthio)acrylamide
-
-
(E)-3-(allylamino)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-glucopyranosylthio)acrylamide
-
-
(E)-3-(allylamino)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-glucopyranosylthio)acrylamide
-
-
(E)-3-(allylamino)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-glucopyranosylthio)acrylamide
-
-
(E)-3-(allylamino)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(2',3',4',6'-tetra-O-acetyl-beta-D-glucopyranosylthio)acrylamide
-
-
(E)-3-(allylamino)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylthio)-acrylamide
-
-
(E)-3-(allylamino)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylthio)-acrylamide
-
-
(E)-3-(allylamino)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylthio)-acrylamide
-
-
(E)-3-(allylamino)-2-cyano-N-(4-[[(3,4-dimethylisoxazol-5-yl)amino]sulfonyl]phenyl)-3-(ethylthio)-acrylamide
-
-
2-(7-amino-1-methyl-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)propanoic acid
-
-
2-(7-amino-1-methyl-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)propanoic acid
86% inhibition at 0.25 mM
2-(7-amino-1-methyl-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)propanoic acid
-
46% inhibition at 0.25 mM
2-(7-amino-1-methyl-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)propanoic acid
-
61% inhibition at 0.25 mM
4-[[(2-amino-4-oxo-3,4-dihydropteridin-6-yl)methyl]amino]-N-(3,4-dimethyl-1,2-oxazol-5-yl)benzene-1-sulfonamide
drug-resistant strains of Helicobacter pylori and multitudinous drug reactions are obstacles in the treatment of Helicobacter pylori infections a reliable tertiary structure of dihydropteroate synthase in complex with inhibitor 4-[[(2-amino-4-oxo-3,4-dihydropteridin-6-yl)methyl]amino]-N-(3,4-dimethyl-1,2-oxazol-5-yl)benzene-1-sulfonamide is constructed by Modeler 9v19. DrugBank compounds of DHPS, published inhibitors, and co-crystal ligand (4-[[(2-amino-4-oxo-3,4-dihydropteridin-6-yl)methyl]amino]-N-(3,4-dimethyl-1,2-oxazol-5-yl)benzene-1-sulfonamide) are docked against dihydropteroate synthase. The best docked compounds are screened against 28.5 million compounds result 1186 structural analogs. Virtual screening workflow and quantum polarized ligand dockings of these compounds against dihydropteroate synthase result three leads that show better XP Gscores, ADME properties, and binding-free energies compared to 4-[[(2-amino-4-oxo-3,4-dihydropteridin-6-yl)methyl]amino]-N-(3,4-dimethyl-1,2-oxazol-5-yl)benzene-1-sulfonamide, DrugBank compounds, and published inhibitors. The proposed leads are also validated by receiver operative characteristic (ROC) curve metrics in the presence of thousand decoys and the best docked existing compounds against DHPS. Long-range molecular dynamics (MD) simulations for 100 ns are executed after post-docking evaluations. Trajectory analysis shows that inter-molecular interactions of the lead-dihydropteroate synthase docking complex are stable throughout the entire runtime of MD simulations than 6MB-DHPS complex and Eliglustat-DHPS complex. The study outcomes showed good competitive binding propensity and active-tunneling of leads over the existing inhibitors, thereby these leads could be ideal inhibitors against dihydropteroate synthase to target Helicobacter pylori
4-[[(2-amino-4-oxo-3,4-dihydropteridin-6-yl)methyl]amino]-N-(3,4-dimethyl-1,2-oxazol-5-yl)benzene-1-sulfonamide
A0A384KP04
-
7,8-Dihydropteroic acid
-
-
7,8-Dihydropteroic acid
-
-
7-amino-3-(1-carboxyethyl)-1-methyl-pyrimido (4,5-c)-pyridazine-4,5(1H,6H)-dione
-
-
7-amino-3-(1-carboxyethyl)-1-methyl-pyrimido (4,5-c)-pyridazine-4,5(1H,6H)-dione
-
-
dapsone
-
dapsone
-
effective against wild-type enzyme and mutants A437G/K540E and A437G. Ineffective against mutants A437G/A581G, S436F/A437G/A613S and S436F/A437G/A613T
dapsone
inhibition of dihydropteroate synthase activity
dihydrofolate
-
-
N-(4-(trifluoromethyl)-benzylidene)-1-(4-(trifluoromethyl))benzylamine
complete inhibition at 0.25 mM
N-(4-(trifluoromethyl)-benzylidene)-1-(4-(trifluoromethyl))benzylamine
-
complete inhibition at 0.25 mM
N-(4-(trifluoromethyl)-benzylidene)-1-(4-(trifluoromethyl))benzylamine
-
complete inhibition at 0.25 mM
p-Aminosalicylate
-
p-Aminosalicylic acid
-
-
p-Aminosalicylic acid
-
-
phosphanilic acid
-
28% inhibition at 2.0 mM, complete inhibition at 20 mM
phosphanilic acid
-
22% inhibition at 2.0 mM, 84% inhibition at 20 mM
pyrimethamine
-
-
sulfacetamide
-
competitive inhibitor
sulfacetamide
-
effective against wild-type enzyme and mutant enzymes A437G/K540E, A437G, A437G/A581G, S436F/A437G/A613S and S436F/A437G/A613T
sulfacetamide
-
competitive inhibitor
sulfachloropyridazine
-
effective against wild-type enzyme and mutant enzymes A437G/K540E, A437G, A437G/A581G, S436F/A437G/A613S and S436F/A437G/A613T
sulfachloropyridazine
-
-
Sulfadiazine
-
0.2 mM, complete inhibition
Sulfadiazine
-
0.2 mM, complete inhibition
sulfadimethoxine
-
effective against wild-type enzyme and mutant A437G. Ineffective against mutants A437G/A581G, A437G/K540E, S436F/A437G/A613S and S436F/A437G/A613T
sulfadimethoxine
inhibition of dihydropteroate synthase activity
sulfadoxine
-
-
sulfadoxine
-
effective against wild-type enzyme. Ineffective against mutants A437G, A437G/A581G, A437G/K540E, S436F/A437G/A613S and S436F/A437G/A613T. IC50 for wild-type enzyme: 0.071 mg/ml, IC50 for mutant enzyme A437G: 0.203 mg/ml, IC50 for mutant enzyme A437G/K540E: 0.423 mg/ml, IC50 for mutant enzyme A437G/A581G: 0.775 mg/ml, IC50 for mutant enzymes S436F/A437G/A613S and S436F/A437G/A613T is above 1 mg/ml
sulfadoxine
inhibition of dihydropteroate synthase activity
sulfamerazine
-
effective against wild-type enzyme and mutants A437G/K540E and A437G. Ineffective against mutants A437G/A581G, S436F/A437G/A613S and S436F/A437G/A613T
sulfamethoxazole
-
competitive inhibitor
sulfamethoxazole
-
competitive to 4-aminobenzoate
sulfamethoxazole
-
effective against wild-type enzyme and mutant A437G. Ineffective against mutants A437G/A581G, A437G/K540E, S436F/A437G/A613S and S436F/A437G/A613T
sulfamethoxazole
inhibition of dihydropteroate synthase activity
sulfamethoxazole
a sulfonamide, KD = 2.3 +/-0.1 microM as revealed by fluorescence spectroscopy
sulfamethoxazole
-
competitive inhibitor
sulfamethoxypyridazine
-
sulfamethoxypyridazine
-
-
sulfamoxole
-
-
sulfanilamide
-
-
sulfanilamide
-
effective against wild-type enzyme and mutants A437G/K540E and A437G. Ineffective against mutants A437G/A581G, S436F/A437G/A613S and S436F/A437G/A613T
sulfapyridine
-
-
sulfaquinoxaline
-
effective against wild-type enzyme and mutant A437G. Ineffective against mutants A437G/A581G, A437G/K540E, S436F/A437G/A613S and S436F/A437G/A613T
sulfathiazole
-
competitive inhibitor
sulfathiazole
-
competitive to 4-aminobenzoate
sulfathiazole
-
competitive to 4-aminobenzoate
sulfathiazole
-
competitive to 4-aminobenzoate
sulfathiazole
-
competitive to 4-aminobenzoate
sulfathiazole
-
effective against wild-type enzyme and mutants A437G/K540E and A437G. Ineffective against mutants A437G/A581G, S436F/A437G/A613S and S436F/A437G/A613T
sulfathiazole
inhibition of dihydropteroate synthase activity
sulfathiazole
-
competitive to 4-aminobenzoate
sulfathiazole
-
competitive inhibitor
sulfisomidine
-
competitive inhibitor
sulfisomidine
-
competitive inhibitor
sulfisoxazole
-
effective against wild-type enzyme and mutant A437G. Ineffective against mutants A437G/A581G, A437G/K540E, S436F/A437G/A613S and S436F/A437G/A613T
sulfonamide
-
competitive inhibitor
sulfonamide
-
competitive to 4-aminobenzoate
sulfonamide
-
competitive to 4-aminobenzoate
sulfonamide
-
competitive inhibitor
additional information
no inhibition by sulfadiazine sodium salt, sulfamethoxazole, sulfamethazole, sulfanilamide, sulfathiazole sodium salt in presence of both substrates
-
additional information
-
no inhibition by sulfadiazine sodium salt, sulfamethoxazole, sulfamethazole, sulfanilamide, sulfathiazole sodium salt in presence of both substrates
-
additional information
-
compounds 4-([(2-amino-4-oxo-3,4-dihydro-pyrido[2,3-d]pyrimidin-6-yl)-(2-phosphono-ethyl)-amino]-methyl)-benzoic acid and 4-([(2-amino-4-oxo-3,4-dihydro-pyrido[2,3-d]pyrimidin-6-yl)-(3-phosphono-propyl)-amino]-methyl)-benzoic acid are inactive in inhibition of DHPS, sp2 centers are required at the pterin 5-6 positions for inhibition
-
additional information
-
a series of 4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazines are designed to improve binding affinity as dihydropteroate synthase inhibitors, overview. The N-methyl ring substitution is removed to improve binding within the pterin pocket, and the length of the side chain carboxylic acid is optimized to fully engage the diphosphate binding site. Evaluation by evaluated an enzyme activity assay, X-ray crystallography, isothermal calorimetry, and surface plasmon resonance to obtain a comprehensive understanding of the binding interactions from structural, kinetic, and thermodynamic perspectives
-
additional information
-
structural, computational and mutagenesis studies on the catalytic and resistance mechanisms of DHPS with sulfonamide antibiotics, overview
-
additional information
-
the association rates of pterin diphosphate are mostly unaffected by the osmolytes, except for a 2fold decrease in the presence of 1 M trehalose
-
additional information
computational insights into factor affecting the potency of diaryl sulfone analogs as Escherichia coli dihydropteroate synthase inhibitors. A statistically significant 3D-QSAR model of diaryl sulfone derivatives has been developed. Probable binding and interaction of diaryl sulfone compounds at the catalytic pocket of the enzyme are explored by molecular docking. DFT calculations helped to understand the probable stabilizing factor of the protein-ligand complex which affected the potency of drug candidates. The computed relative free energy difference between most potent and least potent sulfone compounds further emphasized
-
additional information
-
computational insights into factor affecting the potency of diaryl sulfone analogs as Escherichia coli dihydropteroate synthase inhibitors. A statistically significant 3D-QSAR model of diaryl sulfone derivatives has been developed. Probable binding and interaction of diaryl sulfone compounds at the catalytic pocket of the enzyme are explored by molecular docking. DFT calculations helped to understand the probable stabilizing factor of the protein-ligand complex which affected the potency of drug candidates. The computed relative free energy difference between most potent and least potent sulfone compounds further emphasized
-
additional information
-
simultaneously targeting of the two modules of the bifunctional enzyme with pterin binding inhibitors
-
additional information
-
structural, computational and mutagenesis studies on the catalytic and resistance mechanisms of DHPS with sulfonamide antibiotics, overview
-